CytoSHOW

View, analyze and annotate mutidimensional cellular anatomy and development.

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Troubleshoot

Troubleshooting CytoSHOW on your system?

You may need this one-time installation:

Java must be installed and updated(!) on your computer. Click this Java link to test whether your installation is up-to-date. If you are on a Mac, you must be running OS 10.5 or later for your Java to be up-to-date.

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Email for help/support on using this site, data, or software.

For Mac, Windows, and Linux: View/Analyze movies from the CytoSHOW server

Click here to Run CytoSHOW!

Some sample scenes in CytoSHOW:

Explore anatomy and ultrastructure data from WormAtlas interactively through CytoSHOW.

Example: The nose region of the Slidable Worm annotated serial section project, with high-resolution images and web-linked annotations.

Example: The nerve ring of the N2U specimen, with high-resolution images, hand-drawn labels and web-linked annotations.

Example: The thermotaxis circuit of the JSH specimen, with high-resolution images and hand-drawn labels.

Explore gene-expression/lineage data from the WormGUIDES and EPIC projects interactively through CytoSHOW.

Example: Histone::GFP embryo (emb2) imaged by diSPIM and lineaged for the WormGUIDES Atlas. (...or Download and Run the Atlas modeling app here)

Example: Histone::GFP (green) and pha-4::ceCHERRY (red) in a double-transgenic embryo, with cells auto-annotated and linked to web resources.

"The whole ball o' wax": Immerse yourself in a multi-informatic experience of development and anatomy.

Example: WormAtlas, WormBase, EPiC and CytoSHOW data integrated into a single interactive environment in CytoSHOW.

Or create a custom scene of your own design. Some possibilities....

•4D DIC with cells hand-annotated and linked to web resources

•4D Histone::GFP with cells hand-annotated and linked to web resources

•SPIM high-speed imaging of Histone::GFP (stereo4D): all of embryogenesis in 2-second time steps!

•Two-channel confocal slice4D

•Two-channel confocal stereo4D

•Side-by-side stereo (for uncrossed eyes)

•®© Red-Cyan stereo (for 3D glasses)

•Color-coded by depth in Z

•DeltaTime color-coded

•Two similar embryos superimposed in space and time

•Three embryos, each with a different fluorescence pattern, synchronized in space and time

Troubleshooting CytoSHOW on your system? You may need these one-time installations:

Java must be installed and updated(!) on your computer. Click this Java link to test whether your installation is up-to-date. If you are on a Mac, you must be running OS 10.5 or later for your Java to be up-to-date.

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